There was an update today/yesterday; Potentially, this fixed the issue?
I got it ported to 4.0, finally. I am hesitant to try...
Just make a copy of the project, and test porting the copied project, rather than your original project. That way if it doesn't work, you can just delete the copy that failed, and keep the original for use in 4.0 if 4.1 isn't working still.
Don't do anything that would make more work for youself :)
I just thought you might like to know that there is an update out this week
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It is corrected on Creator 4.1 update 1. Please find this blog post link http://www.cypress.com/blog/psoc-creator-news-and-information/psoc-creator-41-update-1-available-now which talks about the problem. Please see the download section in this link PSoC® Creator™ Integrated Design Environment (IDE) to update.