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The main.c will not be re-generated just like the other part of the code. The component related code will be updated according to the changes in the settings you have made in the schematic. The required API's to control the component are created in the re-generated code. Now you can use main.c to pogram the device according to your need. You may have to modify the main.c file according to your requirement.
The following video series might be helpful to get used to PSoC environment.
How is it that the BLE original project generated the correct main.c in the first place? More details on my issue. When I moved to the robot project, the main.c is still has code that reflects the BLE project and zero code for the robot project.
From where did you get the project ? If you have opened an archived project the main.c is will have contents. If you creating a project from scratch main.c is blank. I saw this main.c file in github for the project you are looking for,
Vasanth R S