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you can use the Cypress Programmer "FLASH MCU Programmer for FM0+/FM3/FM4 (FLASH)"
as follows by command line:
flash "MB9BF418S/T" 4MHz test.mhx COM37 dialog
Define the right device name (copy&paste it from the chipdef.ini)
Define the crystal frequency
Define your filename
Define the right COM port
Option "dialog" displays the progress display window, or "no_dialog"
The result is reported within the file MESSFILE.TXT.
If programming was successfull, the file content shows "OK", otherwise "NG" and a short problem description is given.
Alternatively you can have a look to the 3rd party tool FLASHly, www.holgerium.de/elektronik -> flashly,
that allows programming of your device by command line, too.