I wish you had time to read my year end adventure with my CY8CKIT-062-BLE (rev 11) and ModusToolbox.
And to save your reading time, attached is the patch file which works for rev 08, rev 11 and later boards.
When I backed up and replaced startup_psoc6_01_cm0plus.S at
with the attached file I could build and debug BlinkyLED with board rev 08 and rev 11.
I hope this also works for you. (fingers crossed).