Can you please post your complete project or a shortened version that shows the error so that we all can have a look at all of your settings. To do so, use
Creator->File->Create Workspace Bundle (minimal)
and attach the resulting file.
Per the log, seems you are using the UDB based PWM which cost the UDB resource and the UDB resource is limited.
Please change the UDB based PWM to the TCPWM: PWM(TCPWM mode). PSoC 4 BLE have 4 TCPWM resource.