So I found where to put the files from going through the uninstall script in WICED_5.2. Turns out in Linux the platform files are in a completely different place, in /home/<user>/Documents//WICED-Studio-5.2/.
Do you know the answer to the other two questions or where I might find the answer?
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You need to use WICED Studio for developing applications for CYBT-343026 as it uses the CYW20706 chip.
You can make use of the ChipLoad tool that is included in WICED to load the firmware. This is a command line tool that takes the hex file to be programmed as a parameter.
To know the exact command to be passed, make use of VERBOSE in your make target. It will be similar to this:
ChipLoad.exe -BLUETOOLMODE -REBAUDRATE 3000000 -LAUNCHADDRESS 0x00000000 -PORT COM38 -BAUDRATE AUTO -MINIDRIVER Platforms/CYW920706WCDEVAL/uart.hex -BTP Platforms/CYW920706WCDEVAL/20706_SFLASH.btp -CONFIG build/hello_sensor-CYW920706WCDEVAL-rom-ram-Wiced-release/hello_sensor-CYW920706WCDEVAL-rom-ram-Wiced-release.hex