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You can define the interrupt handler in your own code, and then use ISR_StartEx(&handleInterrupt) to assign this handler to your component. That way you don't need to modify the generated code at all.
D'oh --- I'd forgotten I can do that.
Does this technique apply to all the other autogenerated code as well? Is there every any necessity to edit it?
Cypress also added callback capabilities to some places / components, so there should not be any need to edit the generated code anymore.
Awesome --- thanks.