The code example you're referring, as the name suggests is to read from the NAND flash not the EEPROM.
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This is not a major issue.
Just read the EEPROM contents off the chip whilst it is in circuit, but the device is powerd down.
You can use a buspirate, I do it all the time so I can recover controller information from diskdrive pcbs
OK, i'll try with a Bus Pirate, i have ordered one today. Thanks!