I have tried on Port3 as well and there I can see P3_2 has a smaller (less wide) pulse, but on Port0 I got nothing. Same Cap value acoording to the schematic...
I am planning on using these Ports as Address and Data busses. I do not need their other features. Is there any harm in disconnecting these caps? I thought I could stand them up so I don't lose them... ;-)
The caps are for buffering some of the reference voltages and for CapSense.
Yep, I lifted the caps and it now works flawlessly (afaict).
Perhaps provide some solder jumpers in vNext of the board?