Did you try to update the miniprog3 firmware already?
Connect MiniProg3 to USB, start Cypress PSoC Programmer version 3.24, select the miniprog as the programmer, change to utilities tab and check for updates.
Check miniprog settings for -001 kit :
- 10 pin interface,
- power from miniprog,
- XRES retet function
- No external power connected to main-board