As of now there is no configuration utility available for linux. You need to configure the device in linux but afterwards can use the configured device with a linux machine.
Firstly, thank you for answering my question. I opened the case about this issue. The Cypress answered that you could generate a .cyusbd file on windows, which could be flashed in the device in Linux using one other utility. But which utility should I use for flashing device on Linux and how can I do this? I use the device as a usb device.