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You may update the init_platform(...) in ...\Wiced\Platform\BCM943362WCD4\platform.c to define GPIO pins as input or output.
The wiced_gpio_init(...) with INPUT_PULL_UP will set GPIO to pullup and INPUT_PULL_DOWN will set GPIO to pulldown. There are more options for setting the GPIO and please check wiced_gpio_config_t in ...\include\wiced_platform.h
Use wiced_gpio_input_get(...) to read the input. Use wiced_gpio_output_low() or wiced_gpio_output_high() set the output.